Dashboard
Column
Screened (Target): 1968 (1500)
Enrolled (Target): 701 (609)
Average screened per month
174Average enrolled per month
76Column
Study Flow & Monthly Cascade (Cumulative Numbers), Updated on 2023-07-17
Follow-up status of 482 clients with total follow-up visit: 1272
Column
Daily trend of screening and enrollment
Monthly trend of screening and enrollment
Study Data
Column
Characteristics
| Screened | Enrolled | |||
|---|---|---|---|---|---|
Characteristic | Total, N = 19681 | Missing 92 (4.7)1 | Negative 1120 (56.9)1 | Positive 756 (38.4)1 | N = 7011 |
Study Strata | |||||
FSW <30 HIV- | 622 (38.7) | 26 (41.9) | 321 (34.8) | 275 (44.0) | 264 (44.1) |
FSW <30 HIV+ | 45 (2.8) | 3 (4.8) | 18 (2.0) | 24 (3.8) | 23 (3.8) |
FSW 30+ HIV- | 716 (44.5) | 20 (32.3) | 475 (51.5) | 221 (35.4) | 210 (35.1) |
FSW 30+ HIV+ | 158 (9.8) | 8 (12.9) | 75 (8.1) | 75 (12.0) | 74 (12.4) |
MSM <30 HIV- | 47 (2.9) | 4 (6.5) | 27 (2.9) | 16 (2.6) | 14 (2.3) |
MSM <30 HIV+ | 11 (0.7) | 0 (0.0) | 1 (0.1) | 10 (1.6) | 9 (1.5) |
MSM 30+ HIV- | 7 (0.4) | 1 (1.6) | 5 (0.5) | 1 (0.2) | 1 (0.2) |
MSM 30+ HIV+ | 3 (0.2) | 0 (0.0) | 0 (0.0) | 3 (0.5) | 3 (0.5) |
Missing | 359 | 30 | 198 | 131 | 103 |
1n (%) | |||||
HPV Genotype GeneXpert Results
CTNG Results
Comparison of PIDs between three datasets
Column
Missing Plot
LTFU
Missing AGE
Missing SEX
Missing HIV Status
Screening Data with missing values
R Session Info
R version 4.3.0 (2023-04-21 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 11 x64 (build 22621)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.utf8
[2] LC_CTYPE=English_United States.utf8
[3] LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.utf8
time zone: America/Winnipeg
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] flexdashboard_0.6.1 glue_1.6.2 sjlabelled_1.2.0
[4] gtsummary_1.7.1 lubridate_1.9.2 forcats_1.0.0
[7] stringr_1.5.0 dplyr_1.1.2 purrr_1.0.1
[10] readr_2.1.4 tidyr_1.3.0 tibble_3.2.1
[13] ggplot2_3.4.2 tidyverse_2.0.0
loaded via a namespace (and not attached):
[1] readxl_1.4.2 rlang_1.1.1 magrittr_2.0.3
[4] snakecase_0.11.0 rio_0.5.29 compiler_4.3.0
[7] systemfonts_1.0.4 vctrs_0.6.2 httpcode_0.3.0
[10] pkgconfig_2.0.3 crayon_1.5.2 fastmap_1.1.1
[13] ellipsis_0.3.2 fontawesome_0.5.1 labeling_0.4.2
[16] utf8_1.2.3 promises_1.2.0.1 rmarkdown_2.22
[19] markdown_1.7 tzdb_0.4.0 haven_2.5.2
[22] ragg_1.2.5 xfun_0.39 cachem_1.0.8
[25] jsonlite_1.8.5 highr_0.10 later_1.3.1
[28] uuid_1.1-0 R6_2.5.1 bslib_0.5.0
[31] stringi_1.7.12 jquerylib_0.1.4 cellranger_1.1.0
[34] Rcpp_1.0.10 knitr_1.43 httpuv_1.6.11
[37] timechange_0.2.0 tidyselect_1.2.0 rstudioapi_0.14
[40] yaml_2.3.7 curl_5.0.0 shiny_1.7.4
[43] withr_2.5.0 flextable_0.9.1 askpass_1.1
[46] evaluate_0.21 foreign_0.8-84 zip_2.3.0
[49] xml2_1.3.4 pillar_1.9.0 DT_0.28
[52] insight_0.19.2 plotly_4.10.2 generics_0.1.3
[55] rprojroot_2.0.3 hms_1.1.3 munsell_0.5.0
[58] commonmark_1.9.0 scales_1.2.1 xtable_1.8-4
[61] janitor_2.2.0 gdtools_0.3.3 lazyeval_0.2.2
[64] tools_4.3.0 gfonts_0.2.0 data.table_1.14.8
[67] openxlsx_4.2.5.2 grid_4.3.0 crosstalk_1.2.0
[70] colorspace_2.1-0 cli_3.6.1 textshaping_0.3.6
[73] officer_0.6.2 fontBitstreamVera_0.1.1 fansi_1.0.4
[76] broom.helpers_1.13.0 viridisLite_0.4.2 gt_0.9.0
[79] gtable_0.3.3 sass_0.4.6 digest_0.6.31
[82] fontquiver_0.2.1 crul_1.4.0 htmlwidgets_1.6.2
[85] farver_2.1.1 htmltools_0.5.5 lifecycle_1.0.3
[88] httr_1.4.6 here_1.0.1 mime_0.12
[91] fontLiberation_0.1.0 openssl_2.0.6 package * version date (UTC) lib source
askpass 1.1 2019-01-13 [1] CRAN (R 4.3.0)
broom.helpers 1.13.0 2023-03-28 [1] CRAN (R 4.3.0)
bslib 0.5.0 2023-06-09 [1] CRAN (R 4.3.0)
cachem 1.0.8 2023-05-01 [1] CRAN (R 4.3.0)
cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.3.0)
cli 3.6.1 2023-03-23 [1] CRAN (R 4.3.0)
colorspace 2.1-0 2023-01-23 [1] CRAN (R 4.3.0)
commonmark 1.9.0 2023-03-17 [1] CRAN (R 4.3.0)
crayon 1.5.2 2022-09-29 [1] CRAN (R 4.3.0)
crosstalk 1.2.0 2021-11-04 [1] CRAN (R 4.3.0)
crul 1.4.0 2023-05-17 [1] CRAN (R 4.3.0)
curl 5.0.0 2023-01-12 [1] CRAN (R 4.3.0)
data.table 1.14.8 2023-02-17 [1] CRAN (R 4.3.0)
digest 0.6.31 2022-12-11 [1] CRAN (R 4.3.0)
dplyr * 1.1.2 2023-04-20 [1] CRAN (R 4.3.0)
DT 0.28 2023-05-18 [1] CRAN (R 4.3.0)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.3.0)
evaluate 0.21 2023-05-05 [1] CRAN (R 4.3.0)
fansi 1.0.4 2023-01-22 [1] CRAN (R 4.3.0)
farver 2.1.1 2022-07-06 [1] CRAN (R 4.3.0)
fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.3.0)
flexdashboard * 0.6.1 2023-01-23 [1] CRAN (R 4.3.0)
flextable 0.9.1 2023-04-02 [1] CRAN (R 4.3.0)
fontawesome 0.5.1 2023-04-18 [1] CRAN (R 4.3.0)
fontBitstreamVera 0.1.1 2017-02-01 [1] CRAN (R 4.3.0)
fontLiberation 0.1.0 2016-10-15 [1] CRAN (R 4.3.0)
fontquiver 0.2.1 2017-02-01 [1] CRAN (R 4.3.0)
forcats * 1.0.0 2023-01-29 [1] CRAN (R 4.3.0)
foreign 0.8-84 2022-12-06 [2] CRAN (R 4.3.0)
gdtools 0.3.3 2023-03-27 [1] CRAN (R 4.3.0)
generics 0.1.3 2022-07-05 [1] CRAN (R 4.3.0)
gfonts 0.2.0 2023-01-08 [1] CRAN (R 4.3.0)
ggplot2 * 3.4.2 2023-04-03 [1] CRAN (R 4.3.0)
glue * 1.6.2 2022-02-24 [1] CRAN (R 4.3.0)
gt 0.9.0 2023-03-31 [1] CRAN (R 4.3.0)
gtable 0.3.3 2023-03-21 [1] CRAN (R 4.3.0)
gtsummary * 1.7.1 2023-04-27 [1] CRAN (R 4.3.0)
haven 2.5.2 2023-02-28 [1] CRAN (R 4.3.0)
here 1.0.1 2020-12-13 [1] CRAN (R 4.3.0)
highr 0.10 2022-12-22 [1] CRAN (R 4.3.0)
hms 1.1.3 2023-03-21 [1] CRAN (R 4.3.0)
htmltools 0.5.5 2023-03-23 [1] CRAN (R 4.3.0)
htmlwidgets 1.6.2 2023-03-17 [1] CRAN (R 4.3.1)
httpcode 0.3.0 2020-04-10 [1] CRAN (R 4.3.0)
httpuv 1.6.11 2023-05-11 [1] CRAN (R 4.3.0)
httr 1.4.6 2023-05-08 [1] CRAN (R 4.3.0)
insight 0.19.2 2023-05-23 [1] CRAN (R 4.3.0)
janitor 2.2.0 2023-02-02 [1] CRAN (R 4.3.0)
jquerylib 0.1.4 2021-04-26 [1] CRAN (R 4.3.0)
jsonlite 1.8.5 2023-06-05 [1] CRAN (R 4.3.0)
knitr 1.43 2023-05-25 [1] CRAN (R 4.3.0)
labeling 0.4.2 2020-10-20 [1] CRAN (R 4.3.0)
later 1.3.1 2023-05-02 [1] CRAN (R 4.3.0)
lazyeval 0.2.2 2019-03-15 [1] CRAN (R 4.3.0)
lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.3.0)
lubridate * 1.9.2 2023-02-10 [1] CRAN (R 4.3.0)
magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.3.0)
markdown 1.7 2023-05-16 [1] CRAN (R 4.3.0)
mime 0.12 2021-09-28 [1] CRAN (R 4.3.0)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.3.0)
officer 0.6.2 2023-03-28 [1] CRAN (R 4.3.0)
openssl 2.0.6 2023-03-09 [1] CRAN (R 4.3.0)
openxlsx 4.2.5.2 2023-02-06 [1] CRAN (R 4.3.0)
pillar 1.9.0 2023-03-22 [1] CRAN (R 4.3.0)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.3.0)
plotly 4.10.2 2023-06-03 [1] CRAN (R 4.3.0)
promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.3.0)
purrr * 1.0.1 2023-01-10 [1] CRAN (R 4.3.0)
R6 2.5.1 2021-08-19 [1] CRAN (R 4.3.0)
ragg 1.2.5 2023-01-12 [1] CRAN (R 4.3.0)
Rcpp 1.0.10 2023-01-22 [1] CRAN (R 4.3.0)
readr * 2.1.4 2023-02-10 [1] CRAN (R 4.3.0)
readxl 1.4.2 2023-02-09 [1] CRAN (R 4.3.0)
rio 0.5.29 2021-11-22 [1] CRAN (R 4.3.0)
rlang 1.1.1 2023-04-28 [1] CRAN (R 4.3.0)
rmarkdown 2.22 2023-06-01 [1] CRAN (R 4.3.0)
rprojroot 2.0.3 2022-04-02 [1] CRAN (R 4.3.0)
rstudioapi 0.14 2022-08-22 [1] CRAN (R 4.3.0)
sass 0.4.6 2023-05-03 [1] CRAN (R 4.3.0)
scales 1.2.1 2022-08-20 [1] CRAN (R 4.3.0)
sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.3.0)
shiny 1.7.4 2022-12-15 [1] CRAN (R 4.3.0)
sjlabelled * 1.2.0 2022-04-10 [1] CRAN (R 4.3.0)
snakecase 0.11.0 2019-05-25 [1] CRAN (R 4.3.0)
stringi 1.7.12 2023-01-11 [1] CRAN (R 4.3.0)
stringr * 1.5.0 2022-12-02 [1] CRAN (R 4.3.0)
systemfonts 1.0.4 2022-02-11 [1] CRAN (R 4.3.0)
textshaping 0.3.6 2021-10-13 [1] CRAN (R 4.3.0)
tibble * 3.2.1 2023-03-20 [1] CRAN (R 4.3.0)
tidyr * 1.3.0 2023-01-24 [1] CRAN (R 4.3.0)
tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.3.0)
tidyverse * 2.0.0 2023-02-22 [1] CRAN (R 4.3.0)
timechange 0.2.0 2023-01-11 [1] CRAN (R 4.3.0)
tzdb 0.4.0 2023-05-12 [1] CRAN (R 4.3.0)
utf8 1.2.3 2023-01-31 [1] CRAN (R 4.3.0)
uuid 1.1-0 2022-04-19 [1] CRAN (R 4.3.0)
vctrs 0.6.2 2023-04-19 [1] CRAN (R 4.3.0)
viridisLite 0.4.2 2023-05-02 [1] CRAN (R 4.3.0)
withr 2.5.0 2022-03-03 [1] CRAN (R 4.3.0)
xfun 0.39 2023-04-20 [1] CRAN (R 4.3.0)
xml2 1.3.4 2023-04-27 [1] CRAN (R 4.3.0)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.3.0)
yaml 2.3.7 2023-01-23 [1] CRAN (R 4.3.0)
zip 2.3.0 2023-04-17 [1] CRAN (R 4.3.0)
[1] C:/Users/drmyo/AppData/Local/R/win-library/4.3
[2] C:/Program Files/R/R-4.3.0/library