Dashboard

Column

Screened (Target): 1968 (1500)

Enrolled (Target): 701 (609)

Average screened per month

174

Average enrolled per month

76

Column

Study Flow & Monthly Cascade (Cumulative Numbers), Updated on 2023-07-17

Follow-up status of 482 clients with total follow-up visit: 1272

Column

Daily trend of screening and enrollment

Monthly trend of screening and enrollment

Study Data

Column

Characteristics

Screened

Enrolled

Characteristic

Total, N = 19681

Missing 92 (4.7)1

Negative 1120 (56.9)1

Positive 756 (38.4)1

N = 7011

Study Strata

FSW <30 HIV-

622 (38.7)

26 (41.9)

321 (34.8)

275 (44.0)

264 (44.1)

FSW <30 HIV+

45 (2.8)

3 (4.8)

18 (2.0)

24 (3.8)

23 (3.8)

FSW 30+ HIV-

716 (44.5)

20 (32.3)

475 (51.5)

221 (35.4)

210 (35.1)

FSW 30+ HIV+

158 (9.8)

8 (12.9)

75 (8.1)

75 (12.0)

74 (12.4)

MSM <30 HIV-

47 (2.9)

4 (6.5)

27 (2.9)

16 (2.6)

14 (2.3)

MSM <30 HIV+

11 (0.7)

0 (0.0)

1 (0.1)

10 (1.6)

9 (1.5)

MSM 30+ HIV-

7 (0.4)

1 (1.6)

5 (0.5)

1 (0.2)

1 (0.2)

MSM 30+ HIV+

3 (0.2)

0 (0.0)

0 (0.0)

3 (0.5)

3 (0.5)

Missing

359

30

198

131

103

1n (%)

HPV Genotype GeneXpert Results

CTNG Results

Comparison of PIDs between three datasets

Column

Missing Plot

LTFU

Missing AGE

Missing SEX

Missing HIV Status

Screening Data with missing values

R Session Info

R version 4.3.0 (2023-04-21 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 11 x64 (build 22621)

Matrix products: default


locale:
[1] LC_COLLATE=English_United States.utf8 
[2] LC_CTYPE=English_United States.utf8   
[3] LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.utf8    

time zone: America/Winnipeg
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] flexdashboard_0.6.1 glue_1.6.2          sjlabelled_1.2.0   
 [4] gtsummary_1.7.1     lubridate_1.9.2     forcats_1.0.0      
 [7] stringr_1.5.0       dplyr_1.1.2         purrr_1.0.1        
[10] readr_2.1.4         tidyr_1.3.0         tibble_3.2.1       
[13] ggplot2_3.4.2       tidyverse_2.0.0    

loaded via a namespace (and not attached):
 [1] readxl_1.4.2            rlang_1.1.1             magrittr_2.0.3         
 [4] snakecase_0.11.0        rio_0.5.29              compiler_4.3.0         
 [7] systemfonts_1.0.4       vctrs_0.6.2             httpcode_0.3.0         
[10] pkgconfig_2.0.3         crayon_1.5.2            fastmap_1.1.1          
[13] ellipsis_0.3.2          fontawesome_0.5.1       labeling_0.4.2         
[16] utf8_1.2.3              promises_1.2.0.1        rmarkdown_2.22         
[19] markdown_1.7            tzdb_0.4.0              haven_2.5.2            
[22] ragg_1.2.5              xfun_0.39               cachem_1.0.8           
[25] jsonlite_1.8.5          highr_0.10              later_1.3.1            
[28] uuid_1.1-0              R6_2.5.1                bslib_0.5.0            
[31] stringi_1.7.12          jquerylib_0.1.4         cellranger_1.1.0       
[34] Rcpp_1.0.10             knitr_1.43              httpuv_1.6.11          
[37] timechange_0.2.0        tidyselect_1.2.0        rstudioapi_0.14        
[40] yaml_2.3.7              curl_5.0.0              shiny_1.7.4            
[43] withr_2.5.0             flextable_0.9.1         askpass_1.1            
[46] evaluate_0.21           foreign_0.8-84          zip_2.3.0              
[49] xml2_1.3.4              pillar_1.9.0            DT_0.28                
[52] insight_0.19.2          plotly_4.10.2           generics_0.1.3         
[55] rprojroot_2.0.3         hms_1.1.3               munsell_0.5.0          
[58] commonmark_1.9.0        scales_1.2.1            xtable_1.8-4           
[61] janitor_2.2.0           gdtools_0.3.3           lazyeval_0.2.2         
[64] tools_4.3.0             gfonts_0.2.0            data.table_1.14.8      
[67] openxlsx_4.2.5.2        grid_4.3.0              crosstalk_1.2.0        
[70] colorspace_2.1-0        cli_3.6.1               textshaping_0.3.6      
[73] officer_0.6.2           fontBitstreamVera_0.1.1 fansi_1.0.4            
[76] broom.helpers_1.13.0    viridisLite_0.4.2       gt_0.9.0               
[79] gtable_0.3.3            sass_0.4.6              digest_0.6.31          
[82] fontquiver_0.2.1        crul_1.4.0              htmlwidgets_1.6.2      
[85] farver_2.1.1            htmltools_0.5.5         lifecycle_1.0.3        
[88] httr_1.4.6              here_1.0.1              mime_0.12              
[91] fontLiberation_0.1.0    openssl_2.0.6          
 package           * version date (UTC) lib source
 askpass             1.1     2019-01-13 [1] CRAN (R 4.3.0)
 broom.helpers       1.13.0  2023-03-28 [1] CRAN (R 4.3.0)
 bslib               0.5.0   2023-06-09 [1] CRAN (R 4.3.0)
 cachem              1.0.8   2023-05-01 [1] CRAN (R 4.3.0)
 cellranger          1.1.0   2016-07-27 [1] CRAN (R 4.3.0)
 cli                 3.6.1   2023-03-23 [1] CRAN (R 4.3.0)
 colorspace          2.1-0   2023-01-23 [1] CRAN (R 4.3.0)
 commonmark          1.9.0   2023-03-17 [1] CRAN (R 4.3.0)
 crayon              1.5.2   2022-09-29 [1] CRAN (R 4.3.0)
 crosstalk           1.2.0   2021-11-04 [1] CRAN (R 4.3.0)
 crul                1.4.0   2023-05-17 [1] CRAN (R 4.3.0)
 curl                5.0.0   2023-01-12 [1] CRAN (R 4.3.0)
 data.table          1.14.8  2023-02-17 [1] CRAN (R 4.3.0)
 digest              0.6.31  2022-12-11 [1] CRAN (R 4.3.0)
 dplyr             * 1.1.2   2023-04-20 [1] CRAN (R 4.3.0)
 DT                  0.28    2023-05-18 [1] CRAN (R 4.3.0)
 ellipsis            0.3.2   2021-04-29 [1] CRAN (R 4.3.0)
 evaluate            0.21    2023-05-05 [1] CRAN (R 4.3.0)
 fansi               1.0.4   2023-01-22 [1] CRAN (R 4.3.0)
 farver              2.1.1   2022-07-06 [1] CRAN (R 4.3.0)
 fastmap             1.1.1   2023-02-24 [1] CRAN (R 4.3.0)
 flexdashboard     * 0.6.1   2023-01-23 [1] CRAN (R 4.3.0)
 flextable           0.9.1   2023-04-02 [1] CRAN (R 4.3.0)
 fontawesome         0.5.1   2023-04-18 [1] CRAN (R 4.3.0)
 fontBitstreamVera   0.1.1   2017-02-01 [1] CRAN (R 4.3.0)
 fontLiberation      0.1.0   2016-10-15 [1] CRAN (R 4.3.0)
 fontquiver          0.2.1   2017-02-01 [1] CRAN (R 4.3.0)
 forcats           * 1.0.0   2023-01-29 [1] CRAN (R 4.3.0)
 foreign             0.8-84  2022-12-06 [2] CRAN (R 4.3.0)
 gdtools             0.3.3   2023-03-27 [1] CRAN (R 4.3.0)
 generics            0.1.3   2022-07-05 [1] CRAN (R 4.3.0)
 gfonts              0.2.0   2023-01-08 [1] CRAN (R 4.3.0)
 ggplot2           * 3.4.2   2023-04-03 [1] CRAN (R 4.3.0)
 glue              * 1.6.2   2022-02-24 [1] CRAN (R 4.3.0)
 gt                  0.9.0   2023-03-31 [1] CRAN (R 4.3.0)
 gtable              0.3.3   2023-03-21 [1] CRAN (R 4.3.0)
 gtsummary         * 1.7.1   2023-04-27 [1] CRAN (R 4.3.0)
 haven               2.5.2   2023-02-28 [1] CRAN (R 4.3.0)
 here                1.0.1   2020-12-13 [1] CRAN (R 4.3.0)
 highr               0.10    2022-12-22 [1] CRAN (R 4.3.0)
 hms                 1.1.3   2023-03-21 [1] CRAN (R 4.3.0)
 htmltools           0.5.5   2023-03-23 [1] CRAN (R 4.3.0)
 htmlwidgets         1.6.2   2023-03-17 [1] CRAN (R 4.3.1)
 httpcode            0.3.0   2020-04-10 [1] CRAN (R 4.3.0)
 httpuv              1.6.11  2023-05-11 [1] CRAN (R 4.3.0)
 httr                1.4.6   2023-05-08 [1] CRAN (R 4.3.0)
 insight             0.19.2  2023-05-23 [1] CRAN (R 4.3.0)
 janitor             2.2.0   2023-02-02 [1] CRAN (R 4.3.0)
 jquerylib           0.1.4   2021-04-26 [1] CRAN (R 4.3.0)
 jsonlite            1.8.5   2023-06-05 [1] CRAN (R 4.3.0)
 knitr               1.43    2023-05-25 [1] CRAN (R 4.3.0)
 labeling            0.4.2   2020-10-20 [1] CRAN (R 4.3.0)
 later               1.3.1   2023-05-02 [1] CRAN (R 4.3.0)
 lazyeval            0.2.2   2019-03-15 [1] CRAN (R 4.3.0)
 lifecycle           1.0.3   2022-10-07 [1] CRAN (R 4.3.0)
 lubridate         * 1.9.2   2023-02-10 [1] CRAN (R 4.3.0)
 magrittr            2.0.3   2022-03-30 [1] CRAN (R 4.3.0)
 markdown            1.7     2023-05-16 [1] CRAN (R 4.3.0)
 mime                0.12    2021-09-28 [1] CRAN (R 4.3.0)
 munsell             0.5.0   2018-06-12 [1] CRAN (R 4.3.0)
 officer             0.6.2   2023-03-28 [1] CRAN (R 4.3.0)
 openssl             2.0.6   2023-03-09 [1] CRAN (R 4.3.0)
 openxlsx            4.2.5.2 2023-02-06 [1] CRAN (R 4.3.0)
 pillar              1.9.0   2023-03-22 [1] CRAN (R 4.3.0)
 pkgconfig           2.0.3   2019-09-22 [1] CRAN (R 4.3.0)
 plotly              4.10.2  2023-06-03 [1] CRAN (R 4.3.0)
 promises            1.2.0.1 2021-02-11 [1] CRAN (R 4.3.0)
 purrr             * 1.0.1   2023-01-10 [1] CRAN (R 4.3.0)
 R6                  2.5.1   2021-08-19 [1] CRAN (R 4.3.0)
 ragg                1.2.5   2023-01-12 [1] CRAN (R 4.3.0)
 Rcpp                1.0.10  2023-01-22 [1] CRAN (R 4.3.0)
 readr             * 2.1.4   2023-02-10 [1] CRAN (R 4.3.0)
 readxl              1.4.2   2023-02-09 [1] CRAN (R 4.3.0)
 rio                 0.5.29  2021-11-22 [1] CRAN (R 4.3.0)
 rlang               1.1.1   2023-04-28 [1] CRAN (R 4.3.0)
 rmarkdown           2.22    2023-06-01 [1] CRAN (R 4.3.0)
 rprojroot           2.0.3   2022-04-02 [1] CRAN (R 4.3.0)
 rstudioapi          0.14    2022-08-22 [1] CRAN (R 4.3.0)
 sass                0.4.6   2023-05-03 [1] CRAN (R 4.3.0)
 scales              1.2.1   2022-08-20 [1] CRAN (R 4.3.0)
 sessioninfo         1.2.2   2021-12-06 [1] CRAN (R 4.3.0)
 shiny               1.7.4   2022-12-15 [1] CRAN (R 4.3.0)
 sjlabelled        * 1.2.0   2022-04-10 [1] CRAN (R 4.3.0)
 snakecase           0.11.0  2019-05-25 [1] CRAN (R 4.3.0)
 stringi             1.7.12  2023-01-11 [1] CRAN (R 4.3.0)
 stringr           * 1.5.0   2022-12-02 [1] CRAN (R 4.3.0)
 systemfonts         1.0.4   2022-02-11 [1] CRAN (R 4.3.0)
 textshaping         0.3.6   2021-10-13 [1] CRAN (R 4.3.0)
 tibble            * 3.2.1   2023-03-20 [1] CRAN (R 4.3.0)
 tidyr             * 1.3.0   2023-01-24 [1] CRAN (R 4.3.0)
 tidyselect          1.2.0   2022-10-10 [1] CRAN (R 4.3.0)
 tidyverse         * 2.0.0   2023-02-22 [1] CRAN (R 4.3.0)
 timechange          0.2.0   2023-01-11 [1] CRAN (R 4.3.0)
 tzdb                0.4.0   2023-05-12 [1] CRAN (R 4.3.0)
 utf8                1.2.3   2023-01-31 [1] CRAN (R 4.3.0)
 uuid                1.1-0   2022-04-19 [1] CRAN (R 4.3.0)
 vctrs               0.6.2   2023-04-19 [1] CRAN (R 4.3.0)
 viridisLite         0.4.2   2023-05-02 [1] CRAN (R 4.3.0)
 withr               2.5.0   2022-03-03 [1] CRAN (R 4.3.0)
 xfun                0.39    2023-04-20 [1] CRAN (R 4.3.0)
 xml2                1.3.4   2023-04-27 [1] CRAN (R 4.3.0)
 xtable              1.8-4   2019-04-21 [1] CRAN (R 4.3.0)
 yaml                2.3.7   2023-01-23 [1] CRAN (R 4.3.0)
 zip                 2.3.0   2023-04-17 [1] CRAN (R 4.3.0)

 [1] C:/Users/drmyo/AppData/Local/R/win-library/4.3
 [2] C:/Program Files/R/R-4.3.0/library